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Genome-Wide Association Analysis Unravels New Quantitative Trait Loci (QTLs) for Eight Lodging Resistance Constituent Traits in Rice (Oryza sativa L.)

文献类型： 外文期刊

作者： Sowadan, Ognigamal 1 ; Xu, Shanbin 1 ; Li, Yulong 1 ; Muleke, Everlyne Mmbone 1 ; Sitoe, Helder Manuel 1 ; Dang, Xiaojing 5 ; Jiang, Jianhua 5 ; Dong, Hui 1 ; Hong, Delin 1 ; Yang, Bing 1 ;

作者机构： 1.Nanjing Agr Univ, State Key Lab Crop Genet & Germplasm Enhancement, Nanjing 210095, Peoples R China

2.Inst Crop Res, Anhui Acad Agr Sci, Hefei 230031, Peoples R China

3.Masinde Muliro Univ Sci & Technol, Sch Agr Vet Sci & Technol, Dept Agr & Land Use Management, POB 190-50100, Kakamega, Kenya

4.Pungue Univ, Fac Agron & Biol Sci, POB 323, Manica 2202, Mozambique

5.Inst Rice Res, Anhui Acad Agr Sci, Hefei 230031, Peoples R China

关键词： Oryza sativa; lodging resistance; stem anti-thrust; QTLs; internode length; favorable allele

期刊名称：GENES （ 影响因子：3.5； 五年影响因子：3.9 ）

ISSN：

年卷期： 2024 年 15 卷 1 期

页码：

收录情况： SCI

摘要： Lodging poses a significant challenge to rice yield, prompting the need to identify elite alleles for lodging resistance traits to improve cultivated rice varieties. In this study, a natural population of 518 rice accessions was examined to identify elite alleles associated with plant height (PH), stem diameter (SD), stem anti-thrust (AT/S), and various internode lengths (first (FirINL), second (SecINL), third (ThirINL), fourth (ForINL), and fifth (FifINL) internode lengths). A total of 262 SSR markers linked to these traits were uncovered through association mapping in two environmental conditions. Phenotypic evaluations revealed striking differences among cultivars, and genetic diversity assessments showed polymorphisms across the accessions. Favorable alleles were identified for PH, SD, AT/S, and one to five internode lengths, with specific alleles displaying considerable effects. Noteworthy alleles include RM6811-160 bp on chromosome 6 (which reduces PH) and RM161-145 bp on chromosome 5 (which increases SD). The study identified a total of 42 novel QTLs. Specifically, seven QTLs were identified for PH, four for SD, five for AT/S, five for FirINL, six for SecINL, five for ThirINL, six for ForINL, and four for FifINL. QTLs qAT/S-2, qPH2.1, qForINL2.1, and qFifINL exhibited the most significant phenotypic variance (PVE) of 3.99% for the stem lodging trait. AT/S, PH, ForINL, and FifINL had additive effects of 5.31 kPa, 5.42 cm, 4.27 cm, and 4.27 cm, respectively, offering insights into eight distinct cross-combinations for enhancing each trait. This research suggests the potential for crossbreeding superior parents based on stacked alleles, promising improved rice cultivars with enhanced lodging resistance to meet market demands.

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