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Genome-wide identification of cold responsive transcription factors in Brassica napus L

文献类型： 外文期刊

作者： Ke, Liping 1 ; Lei, Weixia 2 ; Yang, Weiguang 1 ; Wang, Jinyu 3 ; Gao, Janfang 1 ; Cheng, Jinhua 1 ; Sun, Yuqiang 1 ; Fan 1 ;

作者机构： 1.Zhejiang Sci Tech Univ, Coll Life Sci & Med, Plant Genom & Mol Improvement Colored Fiber Lab, Hangzhou 310018, Peoples R China

2.Anhui Acad Agr Sci, Crop Inst, Hefei 230031, Peoples R China

3.Wenzhou Kean Univ, Wenzhou 325060, Peoples R China

关键词： Cold stress; Transcription factor; Brassica napus; Short day

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2020 年 20 卷 1 期

页码：

收录情况： SCI

摘要： Background Cold stress is one of the primary environmental factors that affect plant growth and productivity, especially for crops like Brassica napus that live through cold seasons. Till recently, although a number of genes and pathways involved in B. napus cold response have been revealed by independent studies, a genome-wide identification of the key regulators and the regulatory networks is still lack. In this study, we investigated the transcriptomes of cold stressed semi-winter and winter type rapeseeds in short day condition, mainly with the purpose to systematically identify the functional conserved transcription factors (TFs) in cold response of B. napus. Results Global modulation of gene expression was observed in both the semi-winter type line (158A) and the winter type line (SGDH284) rapeseeds, in response to a seven-day chilling stress in short-day condition. Function analysis of differentially expressed genes (DEGs) revealed enhanced stresses response mechanisms and inhibited photosynthesis in both lines, as well as a more extensive inhibition of some primary biological processes in the semi-winter type line. Over 400 TFs were differentially expressed in response to cold stress, including 56 of them showed high similarity to the known cold response TFs and were consistently regulated in 158A and SGDH284, as well as 25 TFs which targets were over-represented in the total DEGs. A further investigation based on their interactions indicated the critical roles of several TFs in cold response of B. napus. Conclusion In summary, our results revealed the alteration of gene expression in cold stressed semi-winter and winter ecotype B. napus lines and provided a valuable collection of candidate key regulators involved in B. napus response to cold stress, which could expand our understanding of plant stress response and benefit the future improvement of the breed of rapeseeds.

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