Comparative genomic analysis of the COBRA genes in six Rosaceae species and expression analysis in Chinese white pear (Pyrus bretschneideri)
文献类型： 外文期刊
作者： Zhao, Yu 1 ; Su, Xueqiang 2 ; Wang, Xinya 1 ; Wang, Mengna 1 ; Feng, Xiaofeng 1 ; Manzoor, Muhammad Aamir 1 ; Cai, Yongping 1 ;
作者机构： 1.Anhui Agr Univ, Sch Life Sci, Hefei, Peoples R China
2.Anhui Acad Agr Sci, Inst Sericulture, Hefei, Peoples R China
关键词： Phylogenetic analysis; COBRA; Rosaceae species; Pyrus bretschneideri; Secondary cell wall (SCW)
期刊名称：PEERJ （ 影响因子：2.7； 五年影响因子：3.1 ）
ISSN： 2167-8359
年卷期： 2022 年 10 卷
页码：
收录情况： SCI
摘要： COBRA-Like (COBL) genes encode a glycosylphosphatidylinositol (GPI) anchoring protein unique to plants. In current study, 87 COBRA genes were identified in 6 Rosaceae species, including Pyrus bretschneideri (16 genes), Malus domestica (22 genes), Fragaria vesca (13 genes), Prunus mume (11 genes), Rubus occidentalis (13 genes) and Prunus avium (12 genes). We revealed the evolution of the COBRA gene in six Rosaceae species by phylogeny, gene structure, conservative sequence, hydrophobicity analysis, gene replication events and sliding window analysis. In addition, based on the analysis of expression patterns in pear fruit combined with bioinformatics, we identified PbCOBL12 and PbCOBL13 as potential genes regulating secondary cell wall (SCW) formation during pear stone cell development. This study aimed to understand the evolutionary relationship of the COBRA gene in Rosaceae species, clarify the potential function of COBRA in pear fruit development, and provide essential theoretical basis and gene resources for improving pear fruit quality through genetical modification mechanism.
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