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Chromosome-level assembly and evolution analysis of the Trichosanthes truncata genome

文献类型: 外文期刊

作者: Hu, Ying 1 ; Wei, Xiaomei 1 ; Chu, Zhuannan 3 ; Wei, Fan 1 ; Peng, Yude 1 ; Huang, Baoyou 1 ; Dong, Ling 3 ; Wei, Kunhua 1 ; Li, Weiwen 3 ;

作者机构: 1.Guangxi Bot Garden Med Plants, Natl Ctr Tradit Chinese Med Inheritance & Innovat, Nanning 530023, Peoples R China

2.Guangxi Bot Garden Med Plants, Guangxi Key Lab Med Resources Protect & Genet Impr, Nanning 530023, Peoples R China

3.Anhui Acad Agr Sci, Inst Hort, Hefei 230001, Peoples R China

期刊名称:SCIENTIFIC DATA ( 影响因子:5.8; 五年影响因子:8.9 )

ISSN:

年卷期: 2024 年 11 卷 1 期

页码:

收录情况: SCI

摘要: Trichosanthes truncata C. B. Clarke, an important medicinal plant, is a dioecious plant belonging to the Cucurbitaceae family. This study presents a chromosomal-level reference genome assembly for T. truncata. Through the integration of PacBio high-fidelity sequencing and high-throughput chromosome conformation capture technology, a final genome sequence of 637.41 Mb was assembled, with an N50 of 57.24 Mb and consisting of 11 pseudochromosomes. Additionally, 97.21 Mb of repetitive sequences and 36,172 protein-coding genes were annotated. This high-quality genome assembly is of utmost significance for studying the molecular mechanisms underlying the biosynthesis of bioactive compounds. Furthermore, this study provided valuable insights into plant comparative genomics research.

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